Preprints
Leveraging multiple data types to estimate the true size of the Zika epidemic in the Americas
SM Moore, RJ Oidtman, KJ Soda, AS Siraj, RC Reiner, Jr., CM Barker, TA Perkins
medRxiv doi:10.1101/19002865
html | pdf | code
Community-level impacts of spatial repellents for control of diseases vectored by Aedes aegypti mosquitoes
QA ten Bosch, JM Wagman, F Castro-Llanos, NL Achee, JP Grieco, TA Perkins
bioRxiv doi:10.1101/501700
html | pdf | code | data
International travelers and genomics uncover a 'hidden' Zika outbreak
N Grubaugh, S Saraf, K Gangavarapu, A Watts, AL Tan, RJ Oidtman, JT Ladner, G Oliveira, NL Matteson, MUG Kraemer, CBF Vogels, A Hentoff, D Bhatia, D Stanek, B Scott, V Landis, I Stryker, M Cone, E Kopp, A Cannons, L Heberlein-Larson, S White, L Gillis, M Ricciardi, J Kwai, P Lichtenberger, D Magnani, D Watkins, G Palacios, DH Hamer, GeoSentinel Surveillance Network, L Gardner, TA Perkins, G Baele, K Khan, A Morrison, S Isern, SF Michael, KG Andersen
bioRxiv doi:10.1101/496901
html | pdf
DTK-Dengue: A new agent-based model of dengue virus transmission dynamics
KJ Soda, SM Moore, G España, J Bloedow, B Raybaud, B Althouse, MA Johansson, E Wenger, P Welkhoff, TA Perkins*, QA ten Bosch*
bioRxiv doi:10.1101/376533
html | pdf
The basic reproductive number for disease systems with multiple coupled heterogeneities
A Lloyd, U Kitron, TA Perkins, GM Vazquez-Prokopec, L Waller
bioRxiv doi:10.1101/220004
html | pdf
Preliminary results of models to predict areas in the Americas with increased likelihood of Zika virus transmission in 2017
Zika Modeling and Projections for Vaccination Trials Collaboration (in alphabetical order): J Asher, C Barker, G Chen, D Cummings, M Chinazzi, S Daniel-Wyman, M Fischer, N Ferguson, D Follman, ME Halloran, M Johansson, K Kugeler, J Kwan, J Lessler, IM Longini, S Merler, A Monaghan, A Pastore y Piontti, TA Perkins, DR Prevots, RC Reiner, Jr., L Rossi, I Rodriguez-Barraquer, AS Siraj, K Sun, A Vespignanni, Q Zhang
bioRxiv doi:10.1101/187591
html | pdf
2019
Heterogeneous local dynamics revealed by classification analysis of spatially disaggregated time series data
TA Perkins*, I Rodriguez-Barraquer*, C Manore*, AS Siraj, G España, CM Barker, MA Johansson, RC Reiner, Jr.*
Epidemics 100357
html | pdf | code
Model-based assessment of public health impact and cost-effectiveness of dengue vaccination following screening for prior exposure
G España, Y Yao, KB Anderson, MC Fitzpatrick, DL Smith, AC Morrison, A Wilder-Smith, TW Scott, TA Perkins
PLOS Neglected Tropical Diseases 13:e0007482
html | pdf | app
Downgrading disease transmission risk estimates using terminal importations
SJ Fox, SE Bellan, TA Perkins, MA Johansson, LA Meyers
PLOS Neglected Tropical Diseases 13:e0007395
html | pdf
Estimating the impact of city-wide Aedes aegypti population control: an observational study in Iquitos, Peru
RC Reiner, Jr., S Stoddard, G Vazquez-Prokopec, H Astete, TA Perkins, M Sihuincha, J Stancil, DL Smith, T Kochel, E Halsey, U Kitron, AC Morrison, TW Scott
PLOS Neglected Tropical Diseases 13:e0007255
html | pdf
An agent-based model of dengue virus transmission shows how uncertainty about breakthrough infections influences vaccination impact projections
TA Perkins*, RC Reiner, Jr.*, G España*, QA ten Bosch, A Verma, K Liebman, VA Paz-Soldan, JP Elder, AC Morrison, ST Stoddard, U Kitron, GM Vazquez-Prokopec, TW Scott, DL Smith
PLOS Computational Biology 15:e1006710
html | pdf | code
Inter-annual variation in seasonal dengue epidemics driven by multiple interacting factors in Guangzhou, China
RJ Oidtman, S Lai, Z Huang, J Yang, AS Siraj, RC Reiner, Jr., AJ Tatem, TA Perkins, H Yu
Nature Communications 10:1148
html | pdf | code
Spatial sorting as the spatial analogue of natural selection
BL Phillips, TA Perkins
Theoretical Ecology 12:155-163
html | pdf
Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus
MUG Kraemer*, RC Reiner, Jr.*, OJ Brady*, JP Messina*, M Gilbert*, DM Pigott, D Yi, K Johnson, L Earl, LB Marczak, S Shirude, ND Weaver, D Bisanzio, TA Perkins, S Lai, X Lu, P Jones, GE Coelho, RG Carvalho, W Van Bortel, C Marsboom, G Hendrickx, F Schaffner, CG Moore, HH Nax, L Bengtsson, E Wetter, AJ Tatem, JS Brownstein, DL Smith, L Lambrechts, S Cauchemez, C Linard, NR Faria, OG Pybus, TW Scott, Q Liu, H Yu, GRW Wint, SI Hay, N Golding
Nature Microbiology
html | pdf
Letter to the editor in response to 'Reconstruction and prediction of viral disease epidemics'
TA Perkins
Epidemiology and Infection 147:398
html | pdf
Biased efficacy estimates in phase-III dengue vaccine trials due to heterogeneous exposure and differential detectability of primary infections across trial arms
G España, C Hogea, A Guignard, QA ten Bosch, AC Morrison, DL Smith, TW Scott, A Schmidt, TA Perkins
PLOS ONE 14:e0210041
html | pdf
Arbovirus coinfection and co-transmission: a neglected public health concern?
CBF Vogels*, C Ruckert*, SM Cavany*, TA Perkins, GD Ebel, ND Grubaugh
PLOS Biology 17:e3000130
html | pdf | code
2018
Mapping malaria by combining parasite genomic and epidemiologic data
A Wesolowski, A Taylor, H-H Chang, R Verity, S Tessema, J Bailey, TA Perkins, D Neafsey, B Greenhouse, CO Buckee
BMC Medicine 16:190
html | pdf
Local and regional dynamics of chikungunya virus transmission in Colombia: the role of mismatched spatial heterogeneity
SM Moore, QA ten Bosch, AS Siraj, KJ Soda, G España, A Campo, S Gómez, D Salas, B Raybaud, E Wenger, P Welkhoff, TA Perkins
BMC Medicine 16:152
html | pdf | code
Exploring scenarios of chikungunya mitigation with a data-driven agent-based model of the 2014-2016 outbreak in Colombia
G España, J Grefenstette, TA Perkins, C Torres, A Campo Carey, H Diaz, F de la Hoz, DS Burke, WG van Panhuis
Scientific Reports 8:12201
html | pdf
Implementation and applications of EMOD, an individual-based multi-disease modeling platform
A Bershtyn, J Gerardin, D Bridenbecker, CW Lorton, J Bloedow, RS Baker, G Chabot-Couture, Y Chen, T Fischle, K Frey, JS Gauld, H Hu, AS Izzo, DJ Klein, D Lukacevic, KA McCarthy, JC Miller, AL Ouedraogo, TA Perkins, J Steinkraus, QA ten Bosch, HF Ting, S Titova, BG Wagner, PA Welkhoff, EA Wenger, CN Wiswell
Pathogens and Disease 76:fty059
html
Model-based analysis of experimental data from interconnected, row-configured huts elucidates multifaceted effects of a volatile chemical on Aedes aegypti mosquitoes
QA ten Bosch, F Castro-Llanos, H Manda, AC Morrison, JP Grieco, NL Achee, TA Perkins
Parasites and Vectors 11:365
html | pdf. | code
Inferences about spatiotemporal variation in dengue virus transmission are sensitive to assumptions about human mobility: a case study using geolocated tweets from Lahore, Pakistan
MUG Kraemer, D Bisanzio, RC Reiner, Jr., R Zakar, JB Hawkins, CC Freifeld, DL Smith, SI Hay, JS Brownstein, TA Perkins
EPJ Data Science 7:16
html | pdf
Contributions from the silent majority dominate dengue virus transmission
QA ten Bosch, HE Clapham, L Lambrechts, V Duoung, P Buchy, BM Althouse, AL Loyd, LA Waller, AC Morrison, U Kitron, GM Vazquez-Prokopec, TW Scott, TA Perkins
PLOS Pathogens 14:e1006965
html | pdf | code | data
Spatiotemporal incidence of Zika and associated environmental drivers for the 2015-2016 epidemic in Colombia
AS Siraj, I Rodriguez-Barraquer, CM Barker, N Tejedor-Garavito, D Harding, C Lorton, D Lukacevic, G Oates, G España, MUG Kraemer, C Manore, MA Johansson, AJ Tatem, RC Reiner, Jr., TA Perkins
Scientific Data 5:180073
html | pdf
2017
Assessing the population at risk of Zika virus in Asia - is the emergency really over?
AS Siraj, TA Perkins
BMJ Global Health 2:e000309
html | pdf | code
Temperature modulates dengue virus epidemic growth rates through its effects on reproduction numbers and generation intervals
AS Siraj, RJ Oidtman, JH Huber, MUG Kraemer, OJ Brady, MA Johansson, TA Perkins
PLOS Neglected Tropical Diseases 11:e0005797
html | pdf | code
Retracing Zika's footsteps across the Americas with computational modeling
TA Perkins
Proceedings of the National Academy of Sciences 114:5558-5560
html | pdf
2016
The long-term safety, public health impact, and cost-effectiveness of routine vaccination with a recombinant, live-attenuated dengue vaccine (Dengvaxia): A model comparison study
S Flasche*, M Jit*, I Rodriguez-Barraquer*, L Coudeville*, M Recker*, K Koelle*, G Milne*, TJ Hladish*, TA Perkins*, DAT Cummings, I Dorigatti, DJ Laydon, G España, J Kelso, I Longini, J Lourenco, CAB Pearson, RC Reiner, Jr., L Mier-y-Teran-Romero, K Vannice, N Ferguson
PLOS Medicine 13:e1002181
html | pdf | commentary
Pokemon Go and exposure to mosquito-borne diseases: How not to catch 'em all
RJ Oidtman, RC Christofferson, QA ten Bosch, G España, MUG Kraemer, AJ Tatem, CM Barker, TA Perkins
PLOS Currents Outbreaks
html
Quantitative, model-based estimates of variability in the generation and serial intervals of Plasmodium falciparum malaria
JH Huber, GL Johnston, B Greenhouse, DL Smith, TA Perkins
Malaria Journal 15:490
html | pdf | code
After the games are over: life-history trade-offs drive dispersal attenuation following range expansion
TA Perkins, C Boettiger, BL Phillips
Ecology and Evolution doi:10.1002/ece3.2314
html | pdf | code
Model-based projections of Zika virus infections in childbearing women in the Americas
TA Perkins, AS Siraj, C Warren Ruktanonchai, MUG Kraemer, AJ Tatem
Nature Microbiology 1:16126
html | pdf | code
Calling in sick: impacts of fever on intra-urban human mobility
TA Perkins, VA Paz Soldan, ST Stoddard, AC Morrison, BM Forshey, KC Long, ES Halsey, TJ Kochel, JP Elder, U Kitron, TW Scott, GM Vazquez-Prokopec
Proceedings of the Royal Society B 283:20160390
html | pdf | code | data
Quantifying the epidemiological impact of vector control on dengue
RC Reiner, Jr., N Achee, R Barrera, TR Burkot, DD Chadee, G Devine, T Endy, D Gubler, J Homback, I Kleinschmidt, A Lenhart, S Lindsay, I Longini, M Mondy, AC Morrison, TA Perkins, GM Vazquez-Prokopec, P Reiter, S Ritchie, DL Smith, D Strickman, TW Scott
PLOS Neglected Tropical Diseases 10:e0004588
html | pdf
Coupled heterogeneities and their impact on parasite transmission and control
GM Vazquez-Prokopeck, TA Perkins, LA Waller, AL Lloyd, RC Reiner, Jr., TW Scott, U Kitron
Trends in Parasitology 32:356-367
html | pdf
Vectorial capacity and vector control: reconsidering sensitivity to parameters for malaria elimination
OJ Brady, HCJ Godfray, AJ Tatem, PW Gething, JM Cohen, FE McKenzie, TA Perkins, RC Reiner, Jr., LS Tusting, ME Sinka, CL Moyes, PA Eckhoff, TW Scott, SW Lindsay, SI Hay, DL Smith
Transactions of the Royal Society of Tropical Medicine and Hygiene 110:107-117
html | pdf
2015
Mapping residual transmission for malaria elimination
RC Reiner, Jr., A Le Menach, S Kunene, N Ntshalintshali, M Hsiang, TA Perkins, B Greenhouse, AJ Tatem, JM Cohen, DL Smith
eLife 4:e09520
html | pdf
Big city, small world: density, contact rates, and transmission of dengue across Pakistan
MUG Kraemer, TA Perkins, DAT Cummings, R Zakar, SI Hay, DL Smith, RC Reiner, Jr.
Journal of the Royal Society Interface 12:20150468
html | pdf
A critical assessment of vector control for dengue prevention
NL Achee, F Gould, TA Perkins, RC Reiner, Jr., AC Morrison, SA Ritchie, DJ Gubler, R Teyssou, TW Scott
PLOS Neglected Tropical Diseases 9:e0003655
html | pdf
The changing epidemiology of dengue in China, 1990-2014: a descriptive analysis of 25 years of nationwide surveillance data
S Lai, Z Huang, H Zhou, KL Anders, TA Perkins, W Yin, Y Li, D Mu, Q Chen, Z Zhang, Y Qiu, L Wang, H Zhang, L Zeng, X Ren, M Geng, Z Li, AJ Tatem, SI Hay, H Yu
BMC Medicine 13:100
html | pdf | commentary
Adult vector control, mosquito ecology, and malaria transmission
OJ Brady, HCJ Godfray, AJ Tatem, PW Gething, JM Cohen, FE McKenzie, TA Perkins, RC Reiner, Jr., LS Tusting, TW Scott, SW Lindsay, SI Hay, DL Smith
International Health 7:121-129
html | pdf
Estimating drivers of autochthonous transmission of chikungunya virus in its invasion of the Americas
TA Perkins, CJE Metcalf, BT Grenfell, AJ Tatem
PLOS Currents Outbreaks
html | code
2014 and before
See Alex's Google Scholar page for a list of his publications prior to forming his lab at Notre Dame.
Leveraging multiple data types to estimate the true size of the Zika epidemic in the Americas
SM Moore, RJ Oidtman, KJ Soda, AS Siraj, RC Reiner, Jr., CM Barker, TA Perkins
medRxiv doi:10.1101/19002865
html | pdf | code
Community-level impacts of spatial repellents for control of diseases vectored by Aedes aegypti mosquitoes
QA ten Bosch, JM Wagman, F Castro-Llanos, NL Achee, JP Grieco, TA Perkins
bioRxiv doi:10.1101/501700
html | pdf | code | data
International travelers and genomics uncover a 'hidden' Zika outbreak
N Grubaugh, S Saraf, K Gangavarapu, A Watts, AL Tan, RJ Oidtman, JT Ladner, G Oliveira, NL Matteson, MUG Kraemer, CBF Vogels, A Hentoff, D Bhatia, D Stanek, B Scott, V Landis, I Stryker, M Cone, E Kopp, A Cannons, L Heberlein-Larson, S White, L Gillis, M Ricciardi, J Kwai, P Lichtenberger, D Magnani, D Watkins, G Palacios, DH Hamer, GeoSentinel Surveillance Network, L Gardner, TA Perkins, G Baele, K Khan, A Morrison, S Isern, SF Michael, KG Andersen
bioRxiv doi:10.1101/496901
html | pdf
DTK-Dengue: A new agent-based model of dengue virus transmission dynamics
KJ Soda, SM Moore, G España, J Bloedow, B Raybaud, B Althouse, MA Johansson, E Wenger, P Welkhoff, TA Perkins*, QA ten Bosch*
bioRxiv doi:10.1101/376533
html | pdf
The basic reproductive number for disease systems with multiple coupled heterogeneities
A Lloyd, U Kitron, TA Perkins, GM Vazquez-Prokopec, L Waller
bioRxiv doi:10.1101/220004
html | pdf
Preliminary results of models to predict areas in the Americas with increased likelihood of Zika virus transmission in 2017
Zika Modeling and Projections for Vaccination Trials Collaboration (in alphabetical order): J Asher, C Barker, G Chen, D Cummings, M Chinazzi, S Daniel-Wyman, M Fischer, N Ferguson, D Follman, ME Halloran, M Johansson, K Kugeler, J Kwan, J Lessler, IM Longini, S Merler, A Monaghan, A Pastore y Piontti, TA Perkins, DR Prevots, RC Reiner, Jr., L Rossi, I Rodriguez-Barraquer, AS Siraj, K Sun, A Vespignanni, Q Zhang
bioRxiv doi:10.1101/187591
html | pdf
2019
Heterogeneous local dynamics revealed by classification analysis of spatially disaggregated time series data
TA Perkins*, I Rodriguez-Barraquer*, C Manore*, AS Siraj, G España, CM Barker, MA Johansson, RC Reiner, Jr.*
Epidemics 100357
html | pdf | code
Model-based assessment of public health impact and cost-effectiveness of dengue vaccination following screening for prior exposure
G España, Y Yao, KB Anderson, MC Fitzpatrick, DL Smith, AC Morrison, A Wilder-Smith, TW Scott, TA Perkins
PLOS Neglected Tropical Diseases 13:e0007482
html | pdf | app
Downgrading disease transmission risk estimates using terminal importations
SJ Fox, SE Bellan, TA Perkins, MA Johansson, LA Meyers
PLOS Neglected Tropical Diseases 13:e0007395
html | pdf
Estimating the impact of city-wide Aedes aegypti population control: an observational study in Iquitos, Peru
RC Reiner, Jr., S Stoddard, G Vazquez-Prokopec, H Astete, TA Perkins, M Sihuincha, J Stancil, DL Smith, T Kochel, E Halsey, U Kitron, AC Morrison, TW Scott
PLOS Neglected Tropical Diseases 13:e0007255
html | pdf
An agent-based model of dengue virus transmission shows how uncertainty about breakthrough infections influences vaccination impact projections
TA Perkins*, RC Reiner, Jr.*, G España*, QA ten Bosch, A Verma, K Liebman, VA Paz-Soldan, JP Elder, AC Morrison, ST Stoddard, U Kitron, GM Vazquez-Prokopec, TW Scott, DL Smith
PLOS Computational Biology 15:e1006710
html | pdf | code
Inter-annual variation in seasonal dengue epidemics driven by multiple interacting factors in Guangzhou, China
RJ Oidtman, S Lai, Z Huang, J Yang, AS Siraj, RC Reiner, Jr., AJ Tatem, TA Perkins, H Yu
Nature Communications 10:1148
html | pdf | code
Spatial sorting as the spatial analogue of natural selection
BL Phillips, TA Perkins
Theoretical Ecology 12:155-163
html | pdf
Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus
MUG Kraemer*, RC Reiner, Jr.*, OJ Brady*, JP Messina*, M Gilbert*, DM Pigott, D Yi, K Johnson, L Earl, LB Marczak, S Shirude, ND Weaver, D Bisanzio, TA Perkins, S Lai, X Lu, P Jones, GE Coelho, RG Carvalho, W Van Bortel, C Marsboom, G Hendrickx, F Schaffner, CG Moore, HH Nax, L Bengtsson, E Wetter, AJ Tatem, JS Brownstein, DL Smith, L Lambrechts, S Cauchemez, C Linard, NR Faria, OG Pybus, TW Scott, Q Liu, H Yu, GRW Wint, SI Hay, N Golding
Nature Microbiology
html | pdf
Letter to the editor in response to 'Reconstruction and prediction of viral disease epidemics'
TA Perkins
Epidemiology and Infection 147:398
html | pdf
Biased efficacy estimates in phase-III dengue vaccine trials due to heterogeneous exposure and differential detectability of primary infections across trial arms
G España, C Hogea, A Guignard, QA ten Bosch, AC Morrison, DL Smith, TW Scott, A Schmidt, TA Perkins
PLOS ONE 14:e0210041
html | pdf
Arbovirus coinfection and co-transmission: a neglected public health concern?
CBF Vogels*, C Ruckert*, SM Cavany*, TA Perkins, GD Ebel, ND Grubaugh
PLOS Biology 17:e3000130
html | pdf | code
2018
Mapping malaria by combining parasite genomic and epidemiologic data
A Wesolowski, A Taylor, H-H Chang, R Verity, S Tessema, J Bailey, TA Perkins, D Neafsey, B Greenhouse, CO Buckee
BMC Medicine 16:190
html | pdf
Local and regional dynamics of chikungunya virus transmission in Colombia: the role of mismatched spatial heterogeneity
SM Moore, QA ten Bosch, AS Siraj, KJ Soda, G España, A Campo, S Gómez, D Salas, B Raybaud, E Wenger, P Welkhoff, TA Perkins
BMC Medicine 16:152
html | pdf | code
Exploring scenarios of chikungunya mitigation with a data-driven agent-based model of the 2014-2016 outbreak in Colombia
G España, J Grefenstette, TA Perkins, C Torres, A Campo Carey, H Diaz, F de la Hoz, DS Burke, WG van Panhuis
Scientific Reports 8:12201
html | pdf
Implementation and applications of EMOD, an individual-based multi-disease modeling platform
A Bershtyn, J Gerardin, D Bridenbecker, CW Lorton, J Bloedow, RS Baker, G Chabot-Couture, Y Chen, T Fischle, K Frey, JS Gauld, H Hu, AS Izzo, DJ Klein, D Lukacevic, KA McCarthy, JC Miller, AL Ouedraogo, TA Perkins, J Steinkraus, QA ten Bosch, HF Ting, S Titova, BG Wagner, PA Welkhoff, EA Wenger, CN Wiswell
Pathogens and Disease 76:fty059
html
Model-based analysis of experimental data from interconnected, row-configured huts elucidates multifaceted effects of a volatile chemical on Aedes aegypti mosquitoes
QA ten Bosch, F Castro-Llanos, H Manda, AC Morrison, JP Grieco, NL Achee, TA Perkins
Parasites and Vectors 11:365
html | pdf. | code
Inferences about spatiotemporal variation in dengue virus transmission are sensitive to assumptions about human mobility: a case study using geolocated tweets from Lahore, Pakistan
MUG Kraemer, D Bisanzio, RC Reiner, Jr., R Zakar, JB Hawkins, CC Freifeld, DL Smith, SI Hay, JS Brownstein, TA Perkins
EPJ Data Science 7:16
html | pdf
Contributions from the silent majority dominate dengue virus transmission
QA ten Bosch, HE Clapham, L Lambrechts, V Duoung, P Buchy, BM Althouse, AL Loyd, LA Waller, AC Morrison, U Kitron, GM Vazquez-Prokopec, TW Scott, TA Perkins
PLOS Pathogens 14:e1006965
html | pdf | code | data
Spatiotemporal incidence of Zika and associated environmental drivers for the 2015-2016 epidemic in Colombia
AS Siraj, I Rodriguez-Barraquer, CM Barker, N Tejedor-Garavito, D Harding, C Lorton, D Lukacevic, G Oates, G España, MUG Kraemer, C Manore, MA Johansson, AJ Tatem, RC Reiner, Jr., TA Perkins
Scientific Data 5:180073
html | pdf
2017
Assessing the population at risk of Zika virus in Asia - is the emergency really over?
AS Siraj, TA Perkins
BMJ Global Health 2:e000309
html | pdf | code
Temperature modulates dengue virus epidemic growth rates through its effects on reproduction numbers and generation intervals
AS Siraj, RJ Oidtman, JH Huber, MUG Kraemer, OJ Brady, MA Johansson, TA Perkins
PLOS Neglected Tropical Diseases 11:e0005797
html | pdf | code
Retracing Zika's footsteps across the Americas with computational modeling
TA Perkins
Proceedings of the National Academy of Sciences 114:5558-5560
html | pdf
2016
The long-term safety, public health impact, and cost-effectiveness of routine vaccination with a recombinant, live-attenuated dengue vaccine (Dengvaxia): A model comparison study
S Flasche*, M Jit*, I Rodriguez-Barraquer*, L Coudeville*, M Recker*, K Koelle*, G Milne*, TJ Hladish*, TA Perkins*, DAT Cummings, I Dorigatti, DJ Laydon, G España, J Kelso, I Longini, J Lourenco, CAB Pearson, RC Reiner, Jr., L Mier-y-Teran-Romero, K Vannice, N Ferguson
PLOS Medicine 13:e1002181
html | pdf | commentary
Pokemon Go and exposure to mosquito-borne diseases: How not to catch 'em all
RJ Oidtman, RC Christofferson, QA ten Bosch, G España, MUG Kraemer, AJ Tatem, CM Barker, TA Perkins
PLOS Currents Outbreaks
html
Quantitative, model-based estimates of variability in the generation and serial intervals of Plasmodium falciparum malaria
JH Huber, GL Johnston, B Greenhouse, DL Smith, TA Perkins
Malaria Journal 15:490
html | pdf | code
After the games are over: life-history trade-offs drive dispersal attenuation following range expansion
TA Perkins, C Boettiger, BL Phillips
Ecology and Evolution doi:10.1002/ece3.2314
html | pdf | code
Model-based projections of Zika virus infections in childbearing women in the Americas
TA Perkins, AS Siraj, C Warren Ruktanonchai, MUG Kraemer, AJ Tatem
Nature Microbiology 1:16126
html | pdf | code
Calling in sick: impacts of fever on intra-urban human mobility
TA Perkins, VA Paz Soldan, ST Stoddard, AC Morrison, BM Forshey, KC Long, ES Halsey, TJ Kochel, JP Elder, U Kitron, TW Scott, GM Vazquez-Prokopec
Proceedings of the Royal Society B 283:20160390
html | pdf | code | data
Quantifying the epidemiological impact of vector control on dengue
RC Reiner, Jr., N Achee, R Barrera, TR Burkot, DD Chadee, G Devine, T Endy, D Gubler, J Homback, I Kleinschmidt, A Lenhart, S Lindsay, I Longini, M Mondy, AC Morrison, TA Perkins, GM Vazquez-Prokopec, P Reiter, S Ritchie, DL Smith, D Strickman, TW Scott
PLOS Neglected Tropical Diseases 10:e0004588
html | pdf
Coupled heterogeneities and their impact on parasite transmission and control
GM Vazquez-Prokopeck, TA Perkins, LA Waller, AL Lloyd, RC Reiner, Jr., TW Scott, U Kitron
Trends in Parasitology 32:356-367
html | pdf
Vectorial capacity and vector control: reconsidering sensitivity to parameters for malaria elimination
OJ Brady, HCJ Godfray, AJ Tatem, PW Gething, JM Cohen, FE McKenzie, TA Perkins, RC Reiner, Jr., LS Tusting, ME Sinka, CL Moyes, PA Eckhoff, TW Scott, SW Lindsay, SI Hay, DL Smith
Transactions of the Royal Society of Tropical Medicine and Hygiene 110:107-117
html | pdf
2015
Mapping residual transmission for malaria elimination
RC Reiner, Jr., A Le Menach, S Kunene, N Ntshalintshali, M Hsiang, TA Perkins, B Greenhouse, AJ Tatem, JM Cohen, DL Smith
eLife 4:e09520
html | pdf
Big city, small world: density, contact rates, and transmission of dengue across Pakistan
MUG Kraemer, TA Perkins, DAT Cummings, R Zakar, SI Hay, DL Smith, RC Reiner, Jr.
Journal of the Royal Society Interface 12:20150468
html | pdf
A critical assessment of vector control for dengue prevention
NL Achee, F Gould, TA Perkins, RC Reiner, Jr., AC Morrison, SA Ritchie, DJ Gubler, R Teyssou, TW Scott
PLOS Neglected Tropical Diseases 9:e0003655
html | pdf
The changing epidemiology of dengue in China, 1990-2014: a descriptive analysis of 25 years of nationwide surveillance data
S Lai, Z Huang, H Zhou, KL Anders, TA Perkins, W Yin, Y Li, D Mu, Q Chen, Z Zhang, Y Qiu, L Wang, H Zhang, L Zeng, X Ren, M Geng, Z Li, AJ Tatem, SI Hay, H Yu
BMC Medicine 13:100
html | pdf | commentary
Adult vector control, mosquito ecology, and malaria transmission
OJ Brady, HCJ Godfray, AJ Tatem, PW Gething, JM Cohen, FE McKenzie, TA Perkins, RC Reiner, Jr., LS Tusting, TW Scott, SW Lindsay, SI Hay, DL Smith
International Health 7:121-129
html | pdf
Estimating drivers of autochthonous transmission of chikungunya virus in its invasion of the Americas
TA Perkins, CJE Metcalf, BT Grenfell, AJ Tatem
PLOS Currents Outbreaks
html | code
2014 and before
See Alex's Google Scholar page for a list of his publications prior to forming his lab at Notre Dame.
