Preprints
DTK-Dengue: A new agent-based model of dengue virus transmission dynamics
KJ Soda, SM Moore, G España, J Bloedow, B Raybaud, B Althouse, MA Johansson, E Wenger, P Welkhoff, TA Perkins*, QA ten Bosch*
bioRxiv doi:10.1101/376533
html | pdf
Model-based assessment of public health impact and cost-effectiveness of dengue vaccination following screening for prior exposure
G España, Y Yao, KB Anderson, MC Fitzpatrick, DL Smith, AC Morrison, A Wilder-Smith, TW Scott, TA Perkins
bioRxiv doi:10.1101/367060
html | pdf | app
Inter-annual variation in seasonal dengue epidemics driven by multiple interacting factors in Guangzhou, China
RJ Oidtman, S Lai, Z Huang, AS Siraj, RC Reiner, AJ Tatem, TA Perkins, H Yu
bioRxiv doi:10.1101/310896
html | pdf
An agent-based model of dengue virus transmission shows how multiple uncertainties about vaccine efficacy influence public health impact projections
TA Perkins, RC Reiner, G España, QA ten Bosch, A Verma, K Liebman, VA Paz-Soldan, JP Elder, AC Morrison, ST Stoddard, U Kitron, GM Vazquez-Prokopec, TW Scott, DL Smith
bioRxiv doi:10.1101/082396
html | pdf
Heterogeneous local dynamics revealed by classification analysis of spatially disaggregated time series data
TA Perkins*, I Rodriguez-Barraquer*, C Manore*, AS Siraj, G España, CM Barker, MA Johansson, RC Reiner*
bioRxiv doi:10.1101/276006
html | pdf | code
Downgrading disease transmission risk estimates using terminal importations
SJ Fox, SE Bellan, TA Perkins, MA Johansson, LA Meyers
bioRxiv doi:10.1101/265942
html | pdf
The basic reproductive number for disease systems with multiple coupled heterogeneities
A Lloyd, U Kitron, TA Perkins, GM Vazquez-Prokopec, L Waller
bioRxiv doi:10.1101/220004
html | pdf
Estimating the impact of city-wide Aedes aegypti population control: an observational study in Iquitos, Peru
RC Reiner, S Stoddard, G Vazquez-Prokopec, H Astete, TA Perkins, M Sihuincha, J Stancil, DL Smith, T Kochel, E Halsey, U Kitron, AC Morrison, TW Scott
bioRxiv doi:10.1101/265751
html | pdf
Spatial sorting as the spatial analogue of natural selection
BL Phillips, TA Perkins
bioRxiv doi:10.1101/210088
html | pdf
Preliminary results of models to predict areas in the Americas with increased likelihood of Zika virus transmission in 2017
Zika Modeling and Projections for Vaccination Trials Collaboration (in alphabetical order): J Asher, C Barker, G Chen, D Cummings, M Chinazzi, S Daniel-Wyman, M Fischer, N Ferguson, D Follman, ME Halloran, M Johansson, K Kugeler, J Kwan, J Lessler, IM Longini, S Merler, A Monaghan, A Pastore y Piontti, TA Perkins, DR Prevots, R Reiner, L Rossi, I Rodriguez-Barraquer, AS Siraj, K Sun, A Vespignanni, Q Zhang
bioRxiv doi:10.1101/187591
html | pdf
2018
40. Mapping malaria by combining parasite genomic and epidemiologic data
A Wesolowski, A Taylor, H-H Chang, R Verity, S Tessema, J Bailey, TA Perkins, D Neafsey, B Greenhouse, CO Buckee
BMC Medicine 16:190
html | pdf
39. Local and regional dynamics of chikungunya virus transmission in Colombia: the role of mismatched spatial heterogeneity
SM Moore, QA ten Bosch, AS Siraj, KJ Soda, G España, A Campo, S Gómez, D Salas, B Raybaud, E Wenger, P Welkhoff, TA Perkins
BMC Medicine 16:152
html | pdf | code
38. Exploring scenarios of chikungunya mitigation with a data-driven agent-based model of the 2014-2016 outbreak in Colombia
G España, J Grefenstette, TA Perkins, C Torres, A Campo Carey, H Diaz, F de la Hoz, DS Burke, WG van Panhuis
Scientific Reports 8:12201
html | pdf
37. Implementation and applications of EMOD, an individual-based multi-disease modeling platform
A Bershtyn, J Gerardin, D Bridenbecker, CW Lorton, J Bloedow, RS Baker, G Chabot-Couture, Y Chen, T Fischle, K Frey, JS Gauld, H Hu, AS Izzo, DJ Klein, D Lukacevic, KA McCarthy, JC Miller, AL Ouedraogo, TA Perkins, J Steinkraus, QA ten Bosch, HF Ting, S Titova, BG Wagner, PA Welkhoff, EA Wenger, CN Wiswell
Pathogens and Disease 76:fty059
html
36. Model-based analysis of experimental data from interconnected, row-configured huts elucidates multifaceted effects of a volatile chemical on Aedes aegypti mosquitoes
QA ten Bosch, F Castro-Llanos, H Manda, AC Morrison, JP Grieco, NL Achee, TA Perkins
Parasites and Vectors 11:365
html | pdf. | code
35. Inferences about spatiotemporal variation in dengue virus transmission are sensitive to assumptions about human mobility: a case study using geolocated tweets from Lahore, Pakistan
MUG Kraemer, D Bisanzio, RC Reiner, R Zakar, JB Hawkins, CC Freifeld, DL Smith, SI Hay, JS Brownstein, TA Perkins
EPJ Data Science 7:16
html | pdf
34. Contributions from the silent majority dominate dengue virus transmission
QA ten Bosch, HE Clapham, L Lambrechts, V Duoung, P Buchy, BM Althouse, AL Loyd, LA Waller, AC Morrison, U Kitron, GM Vazquez-Prokopec, TW Scott, TA Perkins
PLOS Pathogens 14:e1006965
html | pdf | code | data
33. Spatiotemporal incidence of Zika and associated environmental drivers for the 2015-2016 epidemic in Colombia
AS Siraj, I Rodriguez-Barraquer, CM Barker, N Tejedor-Garavito, D Harding, C Lorton, D Lukacevic, G Oates, G España, MUG Kraemer, C Manore, MA Johansson, AJ Tatem, RC Reiner, TA Perkins
Scientific Data 5:180073
html | pdf
2017
32. Assessing the population at risk of Zika virus in Asia - is the emergency really over?
AS Siraj, TA Perkins
BMJ Global Health 2:e000309
html | pdf | code
31. Temperature modulates dengue virus epidemic growth rates through its effects on reproduction numbers and generation intervals
AS Siraj, RJ Oidtman, JH Huber, MUG Kraemer, OJ Brady, MA Johansson, TA Perkins
PLOS Neglected Tropical Diseases 11:e0005797
html | pdf | code
30. Retracing Zika's footsteps across the Americas with computational modeling
TA Perkins
Proceedings of the National Academy of Sciences 114:5558-5560
html | pdf
2016
29. The long-term safety, public health impact, and cost-effectiveness of routine vaccination with a recombinant, live-attenuated dengue vaccine (Dengvaxia): A model comparison study
S Flasche*, M Jit*, I Rodriguez-Barraquer*, L Coudeville*, M Recker*, K Koelle*, G Milne*, TJ Hladish*, TA Perkins*, DAT Cummings, I Dorigatti, DJ Laydon, G España, J Kelso, I Longini, J Lourenco, CAB Pearson, RC Reiner, L Mier-y-Teran-Romero, K Vannice, N Ferguson
PLOS Medicine 13:e1002181
html | pdf | commentary
28. Pokemon Go and exposure to mosquito-borne diseases: How not to catch 'em all
RJ Oidtman, RC Christofferson, QA ten Bosch, G España, MUG Kraemer, AJ Tatem, CM Barker, TA Perkins
PLOS Currents Outbreaks
html
27. Quantitative, model-based estimates of variability in the generation and serial intervals of Plasmodium falciparum malaria
JH Huber, GL Johnston, B Greenhouse, DL Smith, TA Perkins
Malaria Journal 15:490
html | pdf | code
26. After the games are over: life-history trade-offs drive dispersal attenuation following range expansion
TA Perkins, C Boettiger, BL Phillips
Ecology and Evolution doi:10.1002/ece3.2314
html | pdf | code
25. Model-based projections of Zika virus infections in childbearing women in the Americas
TA Perkins, AS Siraj, C Warren Ruktanonchai, MUG Kraemer, AJ Tatem
Nature Microbiology 1:16126
html | pdf | code
24. Calling in sick: impacts of fever on intra-urban human mobility
TA Perkins, VA Paz Soldan, ST Stoddard, AC Morrison, BM Forshey, KC Long, ES Halsey, TJ Kochel, JP Elder, U Kitron, TW Scott, GM Vazquez-Prokopec
Proceedings of the Royal Society B 283:20160390
html | pdf | code | data
23. Quantifying the epidemiological impact of vector control on dengue
RC Reiner, N Achee, R Barrera, TR Burkot, DD Chadee, G Devine, T Endy, D Gubler, J Homback, I Kleinschmidt, A Lenhart, S Lindsay, I Longini, M Mondy, AC Morrison, TA Perkins, GM Vazquez-Prokopec, P Reiter, S Ritchie, DL Smith, D Strickman, TW Scott
PLOS Neglected Tropical Diseases 10:e0004588
html | pdf
22. Coupled heterogeneities and their impact on parasite transmission and control
GM Vazquez-Prokopeck, TA Perkins, LA Waller, AL Lloyd, RC Reiner, TW Scott, U Kitron
Trends in Parasitology 32:356-367
html | pdf
21. Vectorial capacity and vector control: reconsidering sensitivity to parameters for malaria elimination
OJ Brady, HCJ Godfray, AJ Tatem, PW Gething, JM Cohen, FE McKenzie, TA Perkins, RC Reiner, LS Tusting, ME Sinka, CL Moyes, PA Eckhoff, TW Scott, SW Lindsay, SI Hay, DL Smith
Transactions of the Royal Society of Tropical Medicine and Hygiene 110:107-117
html | pdf
2015
20. Mapping residual transmission for malaria elimination
RC Reiner, A Le Menach, S Kunene, N Ntshalintshali, M Hsiang, TA Perkins, B Greenhouse, AJ Tatem, JM Cohen, DL Smith
eLife 4:e09520
html | pdf
19. Big city, small world: density, contact rates, and transmission of dengue across Pakistan
MUG Kraemer, TA Perkins, DAT Cummings, R Zakar, SI Hay, DL Smith, RC Reiner
Journal of the Royal Society Interface 12:20150468
html | pdf
18. A critical assessment of vector control for dengue prevention
NL Achee, F Gould, TA Perkins, RC Reiner, AC Morrison, SA Ritchie, DJ Gubler, R Teyssou, TW Scott
PLOS Neglected Tropical Diseases 9:e0003655
html | pdf
17. The changing epidemiology of dengue in China, 1990-2014: a descriptive analysis of 25 years of nationwide surveillance data
S Lai, Z Huang, H Zhou, KL Anders, TA Perkins, W Yin, Y Li, D Mu, Q Chen, Z Zhang, Y Qiu, L Wang, H Zhang, L Zeng, X Ren, M Geng, Z Li, AJ Tatem, SI Hay, H Yu
BMC Medicine 13:100
html | pdf | commentary
16. Adult vector control, mosquito ecology, and malaria transmission
OJ Brady, HCJ Godfray, AJ Tatem, PW Gething, JM Cohen, FE McKenzie, TA Perkins, RC Reiner, LS Tusting, TW Scott, SW Lindsay, SI Hay, DL Smith
International Health 7:121-129
html | pdf
15. Estimating drivers of autochthonous transmission of chikungunya virus in its invasion of the Americas
TA Perkins, CJE Metcalf, BT Grenfell, AJ Tatem
PLOS Currents Outbreaks
html
2014
14. Theory and data for simulating fine-scale human movement in an urban environment
TA Perkins, AJ Garcia, VA Paz Soldan, ST Stoddard, RC Reiner, GM Vazquez-Prokopec, D Bisanzio, ES Halsey, TJ Kochel, AC Morrison, DL Smith, TW Scott, AJ Tatem
Journal of the Royal Society Interface 11:20140642
html | pdf | code
13. A review of transmission models of dengue: a quantitative and qualitative analysis of model features
TA Perkins*, RC Reiner*, I Rodriguez-Barraquer, DL Smith, TW Scott, DAT Cummings
In: Dengue and Dengue Hemorrhagic Fever, eds. DJ Gubler, EE Ooi, and J Farrar. CABI Publishing
*denotes equal contributions
publisher website
12. A global assembly of adult female mosquito mark-release-recapture data to inform the control of mosquito-borne pathogens
CA Guerra, RC Reiner, TA Perkins, SW Lindsay, JT Midega, OJ Brady, CM Barker, WK Reisen, LC Harrington, W Takken, U Kitron, AL Lloyd, SI Hay, TW Scott, DL Smith
Parasites and Vectors 7:276
html
11. Evolutionary dynamics of West Nile virus in Georgia, 2001-2011
JE Phillips, D Stallknecht, TA Perkins, N McClure, D Mead
Virus Genes 49:132-136
html
10. Recasting the theory of mosquito-borne pathogen transmission dynamics and control
DL Smith, TA Perkins, RC Reiner, CM Barker, T Niu, LF Chaves, AM Ellis, DB George, A Le Menach, JRC Pulliam, D Bisanzio, C Buckee, C Chiyaka, DAT Cummings, AJ Garcia, ML Gatton, PW Gething, DM Hartley, G Johnston, EY Klein, E Michael, AL Lloyd, DM Pigott, WK Reisen, N Ruktanonchai, BK Singh, J Stoller, AJ Tatem, U Kitron, HCJ Godfray, JM Cohen, SI Hay, TW Scott
Transactions of the Royal Society of Tropical Medicine and Hygiene 108:185-197
html | pdf
9. Heterogeneous blood feeding patterns of Aedes aegypti in Iquitos, Peru
KA Liebman, ST Stoddard, RC Reiner, TA Perkins, H Astete, M Sihuincha, ES Halsey, TJ Kochel, AC Morrison, TW Scott
PLOS Neglected Tropical Diseases 8:e2702
html | pdf
2013
8. Heterogeneity, mixing, and the spatial scales of mosquito-borne pathogen transmission
TA Perkins, TW Scott, A Le Menach, DL Smith
PLOS Computational Biology 9:e1003327
html | pdf | code
7. Mosquito population regulation and larval source management in heterogeneous environments
DL Smith, TA Perkins, LS Tusting, TW Scott, SW Lindsay
PLOS One 8:e71247
html | pdf
6. A systematic review of mathematical models of mosquito-borne pathogen transmission: 1970-2010
RC Reiner*, TA Perkins*, CM Barker, T Niu, LF Chaves, AM Ellis, DB George, A Le Menach, JRC Pulliam, D Bisanzio, C Buckee, C Chiyaka, DAT Cummings, AJ Garcia, ML Gatton, PW Gething, DM Hartley, G Johnston, EY Klein, E Michael, SW Lindsay, AL Lloyd, DM Pigott, WK Reisen, N Ruktanonchai, BK Singh, AJ Tatem, U Kitron, SI Hay, TW Scott, DL Smith
Journal of the Royal Society Interface 10:20120921
*denotes equal contributions
html | pdf
5. Evolution of dispersal and life history interact to drive accelerating spread of an invasive species
TA Perkins, BL Phillips, ML Baskett, A Hastings
Ecology Letters 16:1079-1087
html | pdf
2012 and before
4. Evolutionarily labile species interactions and spatial spread of invasive species
TA Perkins
American Naturalist 179:E37-E54
html | pdf
3. Falling behind: delayed growth explains life-history variation in Snake River fall Chinook salmon
TA Perkins, HI Jager
Transactions of the American Fisheries Society 140:959-972
html | pdf
2. Multi-species interactions in competitive hierarchies: new methods and empirical test
TA Perkins, WR Holmes, JF Weltzin
Journal of Vegetation Science 18:685-692
html | pdf
1. Interactions between the social spider Anelosimus studiosus (Araneae, Theridiidae) and foreign spiders that frequent its nests
TA Perkins, SE Riechert, TC Jones
Journal of Arachnology 35:143-152
html | pdf
DTK-Dengue: A new agent-based model of dengue virus transmission dynamics
KJ Soda, SM Moore, G España, J Bloedow, B Raybaud, B Althouse, MA Johansson, E Wenger, P Welkhoff, TA Perkins*, QA ten Bosch*
bioRxiv doi:10.1101/376533
html | pdf
Model-based assessment of public health impact and cost-effectiveness of dengue vaccination following screening for prior exposure
G España, Y Yao, KB Anderson, MC Fitzpatrick, DL Smith, AC Morrison, A Wilder-Smith, TW Scott, TA Perkins
bioRxiv doi:10.1101/367060
html | pdf | app
Inter-annual variation in seasonal dengue epidemics driven by multiple interacting factors in Guangzhou, China
RJ Oidtman, S Lai, Z Huang, AS Siraj, RC Reiner, AJ Tatem, TA Perkins, H Yu
bioRxiv doi:10.1101/310896
html | pdf
An agent-based model of dengue virus transmission shows how multiple uncertainties about vaccine efficacy influence public health impact projections
TA Perkins, RC Reiner, G España, QA ten Bosch, A Verma, K Liebman, VA Paz-Soldan, JP Elder, AC Morrison, ST Stoddard, U Kitron, GM Vazquez-Prokopec, TW Scott, DL Smith
bioRxiv doi:10.1101/082396
html | pdf
Heterogeneous local dynamics revealed by classification analysis of spatially disaggregated time series data
TA Perkins*, I Rodriguez-Barraquer*, C Manore*, AS Siraj, G España, CM Barker, MA Johansson, RC Reiner*
bioRxiv doi:10.1101/276006
html | pdf | code
Downgrading disease transmission risk estimates using terminal importations
SJ Fox, SE Bellan, TA Perkins, MA Johansson, LA Meyers
bioRxiv doi:10.1101/265942
html | pdf
The basic reproductive number for disease systems with multiple coupled heterogeneities
A Lloyd, U Kitron, TA Perkins, GM Vazquez-Prokopec, L Waller
bioRxiv doi:10.1101/220004
html | pdf
Estimating the impact of city-wide Aedes aegypti population control: an observational study in Iquitos, Peru
RC Reiner, S Stoddard, G Vazquez-Prokopec, H Astete, TA Perkins, M Sihuincha, J Stancil, DL Smith, T Kochel, E Halsey, U Kitron, AC Morrison, TW Scott
bioRxiv doi:10.1101/265751
html | pdf
Spatial sorting as the spatial analogue of natural selection
BL Phillips, TA Perkins
bioRxiv doi:10.1101/210088
html | pdf
Preliminary results of models to predict areas in the Americas with increased likelihood of Zika virus transmission in 2017
Zika Modeling and Projections for Vaccination Trials Collaboration (in alphabetical order): J Asher, C Barker, G Chen, D Cummings, M Chinazzi, S Daniel-Wyman, M Fischer, N Ferguson, D Follman, ME Halloran, M Johansson, K Kugeler, J Kwan, J Lessler, IM Longini, S Merler, A Monaghan, A Pastore y Piontti, TA Perkins, DR Prevots, R Reiner, L Rossi, I Rodriguez-Barraquer, AS Siraj, K Sun, A Vespignanni, Q Zhang
bioRxiv doi:10.1101/187591
html | pdf
2018
40. Mapping malaria by combining parasite genomic and epidemiologic data
A Wesolowski, A Taylor, H-H Chang, R Verity, S Tessema, J Bailey, TA Perkins, D Neafsey, B Greenhouse, CO Buckee
BMC Medicine 16:190
html | pdf
39. Local and regional dynamics of chikungunya virus transmission in Colombia: the role of mismatched spatial heterogeneity
SM Moore, QA ten Bosch, AS Siraj, KJ Soda, G España, A Campo, S Gómez, D Salas, B Raybaud, E Wenger, P Welkhoff, TA Perkins
BMC Medicine 16:152
html | pdf | code
38. Exploring scenarios of chikungunya mitigation with a data-driven agent-based model of the 2014-2016 outbreak in Colombia
G España, J Grefenstette, TA Perkins, C Torres, A Campo Carey, H Diaz, F de la Hoz, DS Burke, WG van Panhuis
Scientific Reports 8:12201
html | pdf
37. Implementation and applications of EMOD, an individual-based multi-disease modeling platform
A Bershtyn, J Gerardin, D Bridenbecker, CW Lorton, J Bloedow, RS Baker, G Chabot-Couture, Y Chen, T Fischle, K Frey, JS Gauld, H Hu, AS Izzo, DJ Klein, D Lukacevic, KA McCarthy, JC Miller, AL Ouedraogo, TA Perkins, J Steinkraus, QA ten Bosch, HF Ting, S Titova, BG Wagner, PA Welkhoff, EA Wenger, CN Wiswell
Pathogens and Disease 76:fty059
html
36. Model-based analysis of experimental data from interconnected, row-configured huts elucidates multifaceted effects of a volatile chemical on Aedes aegypti mosquitoes
QA ten Bosch, F Castro-Llanos, H Manda, AC Morrison, JP Grieco, NL Achee, TA Perkins
Parasites and Vectors 11:365
html | pdf. | code
35. Inferences about spatiotemporal variation in dengue virus transmission are sensitive to assumptions about human mobility: a case study using geolocated tweets from Lahore, Pakistan
MUG Kraemer, D Bisanzio, RC Reiner, R Zakar, JB Hawkins, CC Freifeld, DL Smith, SI Hay, JS Brownstein, TA Perkins
EPJ Data Science 7:16
html | pdf
34. Contributions from the silent majority dominate dengue virus transmission
QA ten Bosch, HE Clapham, L Lambrechts, V Duoung, P Buchy, BM Althouse, AL Loyd, LA Waller, AC Morrison, U Kitron, GM Vazquez-Prokopec, TW Scott, TA Perkins
PLOS Pathogens 14:e1006965
html | pdf | code | data
33. Spatiotemporal incidence of Zika and associated environmental drivers for the 2015-2016 epidemic in Colombia
AS Siraj, I Rodriguez-Barraquer, CM Barker, N Tejedor-Garavito, D Harding, C Lorton, D Lukacevic, G Oates, G España, MUG Kraemer, C Manore, MA Johansson, AJ Tatem, RC Reiner, TA Perkins
Scientific Data 5:180073
html | pdf
2017
32. Assessing the population at risk of Zika virus in Asia - is the emergency really over?
AS Siraj, TA Perkins
BMJ Global Health 2:e000309
html | pdf | code
31. Temperature modulates dengue virus epidemic growth rates through its effects on reproduction numbers and generation intervals
AS Siraj, RJ Oidtman, JH Huber, MUG Kraemer, OJ Brady, MA Johansson, TA Perkins
PLOS Neglected Tropical Diseases 11:e0005797
html | pdf | code
30. Retracing Zika's footsteps across the Americas with computational modeling
TA Perkins
Proceedings of the National Academy of Sciences 114:5558-5560
html | pdf
2016
29. The long-term safety, public health impact, and cost-effectiveness of routine vaccination with a recombinant, live-attenuated dengue vaccine (Dengvaxia): A model comparison study
S Flasche*, M Jit*, I Rodriguez-Barraquer*, L Coudeville*, M Recker*, K Koelle*, G Milne*, TJ Hladish*, TA Perkins*, DAT Cummings, I Dorigatti, DJ Laydon, G España, J Kelso, I Longini, J Lourenco, CAB Pearson, RC Reiner, L Mier-y-Teran-Romero, K Vannice, N Ferguson
PLOS Medicine 13:e1002181
html | pdf | commentary
28. Pokemon Go and exposure to mosquito-borne diseases: How not to catch 'em all
RJ Oidtman, RC Christofferson, QA ten Bosch, G España, MUG Kraemer, AJ Tatem, CM Barker, TA Perkins
PLOS Currents Outbreaks
html
27. Quantitative, model-based estimates of variability in the generation and serial intervals of Plasmodium falciparum malaria
JH Huber, GL Johnston, B Greenhouse, DL Smith, TA Perkins
Malaria Journal 15:490
html | pdf | code
26. After the games are over: life-history trade-offs drive dispersal attenuation following range expansion
TA Perkins, C Boettiger, BL Phillips
Ecology and Evolution doi:10.1002/ece3.2314
html | pdf | code
25. Model-based projections of Zika virus infections in childbearing women in the Americas
TA Perkins, AS Siraj, C Warren Ruktanonchai, MUG Kraemer, AJ Tatem
Nature Microbiology 1:16126
html | pdf | code
24. Calling in sick: impacts of fever on intra-urban human mobility
TA Perkins, VA Paz Soldan, ST Stoddard, AC Morrison, BM Forshey, KC Long, ES Halsey, TJ Kochel, JP Elder, U Kitron, TW Scott, GM Vazquez-Prokopec
Proceedings of the Royal Society B 283:20160390
html | pdf | code | data
23. Quantifying the epidemiological impact of vector control on dengue
RC Reiner, N Achee, R Barrera, TR Burkot, DD Chadee, G Devine, T Endy, D Gubler, J Homback, I Kleinschmidt, A Lenhart, S Lindsay, I Longini, M Mondy, AC Morrison, TA Perkins, GM Vazquez-Prokopec, P Reiter, S Ritchie, DL Smith, D Strickman, TW Scott
PLOS Neglected Tropical Diseases 10:e0004588
html | pdf
22. Coupled heterogeneities and their impact on parasite transmission and control
GM Vazquez-Prokopeck, TA Perkins, LA Waller, AL Lloyd, RC Reiner, TW Scott, U Kitron
Trends in Parasitology 32:356-367
html | pdf
21. Vectorial capacity and vector control: reconsidering sensitivity to parameters for malaria elimination
OJ Brady, HCJ Godfray, AJ Tatem, PW Gething, JM Cohen, FE McKenzie, TA Perkins, RC Reiner, LS Tusting, ME Sinka, CL Moyes, PA Eckhoff, TW Scott, SW Lindsay, SI Hay, DL Smith
Transactions of the Royal Society of Tropical Medicine and Hygiene 110:107-117
html | pdf
2015
20. Mapping residual transmission for malaria elimination
RC Reiner, A Le Menach, S Kunene, N Ntshalintshali, M Hsiang, TA Perkins, B Greenhouse, AJ Tatem, JM Cohen, DL Smith
eLife 4:e09520
html | pdf
19. Big city, small world: density, contact rates, and transmission of dengue across Pakistan
MUG Kraemer, TA Perkins, DAT Cummings, R Zakar, SI Hay, DL Smith, RC Reiner
Journal of the Royal Society Interface 12:20150468
html | pdf
18. A critical assessment of vector control for dengue prevention
NL Achee, F Gould, TA Perkins, RC Reiner, AC Morrison, SA Ritchie, DJ Gubler, R Teyssou, TW Scott
PLOS Neglected Tropical Diseases 9:e0003655
html | pdf
17. The changing epidemiology of dengue in China, 1990-2014: a descriptive analysis of 25 years of nationwide surveillance data
S Lai, Z Huang, H Zhou, KL Anders, TA Perkins, W Yin, Y Li, D Mu, Q Chen, Z Zhang, Y Qiu, L Wang, H Zhang, L Zeng, X Ren, M Geng, Z Li, AJ Tatem, SI Hay, H Yu
BMC Medicine 13:100
html | pdf | commentary
16. Adult vector control, mosquito ecology, and malaria transmission
OJ Brady, HCJ Godfray, AJ Tatem, PW Gething, JM Cohen, FE McKenzie, TA Perkins, RC Reiner, LS Tusting, TW Scott, SW Lindsay, SI Hay, DL Smith
International Health 7:121-129
html | pdf
15. Estimating drivers of autochthonous transmission of chikungunya virus in its invasion of the Americas
TA Perkins, CJE Metcalf, BT Grenfell, AJ Tatem
PLOS Currents Outbreaks
html
2014
14. Theory and data for simulating fine-scale human movement in an urban environment
TA Perkins, AJ Garcia, VA Paz Soldan, ST Stoddard, RC Reiner, GM Vazquez-Prokopec, D Bisanzio, ES Halsey, TJ Kochel, AC Morrison, DL Smith, TW Scott, AJ Tatem
Journal of the Royal Society Interface 11:20140642
html | pdf | code
13. A review of transmission models of dengue: a quantitative and qualitative analysis of model features
TA Perkins*, RC Reiner*, I Rodriguez-Barraquer, DL Smith, TW Scott, DAT Cummings
In: Dengue and Dengue Hemorrhagic Fever, eds. DJ Gubler, EE Ooi, and J Farrar. CABI Publishing
*denotes equal contributions
publisher website
12. A global assembly of adult female mosquito mark-release-recapture data to inform the control of mosquito-borne pathogens
CA Guerra, RC Reiner, TA Perkins, SW Lindsay, JT Midega, OJ Brady, CM Barker, WK Reisen, LC Harrington, W Takken, U Kitron, AL Lloyd, SI Hay, TW Scott, DL Smith
Parasites and Vectors 7:276
html
11. Evolutionary dynamics of West Nile virus in Georgia, 2001-2011
JE Phillips, D Stallknecht, TA Perkins, N McClure, D Mead
Virus Genes 49:132-136
html
10. Recasting the theory of mosquito-borne pathogen transmission dynamics and control
DL Smith, TA Perkins, RC Reiner, CM Barker, T Niu, LF Chaves, AM Ellis, DB George, A Le Menach, JRC Pulliam, D Bisanzio, C Buckee, C Chiyaka, DAT Cummings, AJ Garcia, ML Gatton, PW Gething, DM Hartley, G Johnston, EY Klein, E Michael, AL Lloyd, DM Pigott, WK Reisen, N Ruktanonchai, BK Singh, J Stoller, AJ Tatem, U Kitron, HCJ Godfray, JM Cohen, SI Hay, TW Scott
Transactions of the Royal Society of Tropical Medicine and Hygiene 108:185-197
html | pdf
9. Heterogeneous blood feeding patterns of Aedes aegypti in Iquitos, Peru
KA Liebman, ST Stoddard, RC Reiner, TA Perkins, H Astete, M Sihuincha, ES Halsey, TJ Kochel, AC Morrison, TW Scott
PLOS Neglected Tropical Diseases 8:e2702
html | pdf
2013
8. Heterogeneity, mixing, and the spatial scales of mosquito-borne pathogen transmission
TA Perkins, TW Scott, A Le Menach, DL Smith
PLOS Computational Biology 9:e1003327
html | pdf | code
7. Mosquito population regulation and larval source management in heterogeneous environments
DL Smith, TA Perkins, LS Tusting, TW Scott, SW Lindsay
PLOS One 8:e71247
html | pdf
6. A systematic review of mathematical models of mosquito-borne pathogen transmission: 1970-2010
RC Reiner*, TA Perkins*, CM Barker, T Niu, LF Chaves, AM Ellis, DB George, A Le Menach, JRC Pulliam, D Bisanzio, C Buckee, C Chiyaka, DAT Cummings, AJ Garcia, ML Gatton, PW Gething, DM Hartley, G Johnston, EY Klein, E Michael, SW Lindsay, AL Lloyd, DM Pigott, WK Reisen, N Ruktanonchai, BK Singh, AJ Tatem, U Kitron, SI Hay, TW Scott, DL Smith
Journal of the Royal Society Interface 10:20120921
*denotes equal contributions
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5. Evolution of dispersal and life history interact to drive accelerating spread of an invasive species
TA Perkins, BL Phillips, ML Baskett, A Hastings
Ecology Letters 16:1079-1087
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2012 and before
4. Evolutionarily labile species interactions and spatial spread of invasive species
TA Perkins
American Naturalist 179:E37-E54
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3. Falling behind: delayed growth explains life-history variation in Snake River fall Chinook salmon
TA Perkins, HI Jager
Transactions of the American Fisheries Society 140:959-972
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2. Multi-species interactions in competitive hierarchies: new methods and empirical test
TA Perkins, WR Holmes, JF Weltzin
Journal of Vegetation Science 18:685-692
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1. Interactions between the social spider Anelosimus studiosus (Araneae, Theridiidae) and foreign spiders that frequent its nests
TA Perkins, SE Riechert, TC Jones
Journal of Arachnology 35:143-152
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