Faculty
Alex Perkins
Associate Professor of Biological Sciences
Concurrent Associate Professor of Applied and Computational Mathematics and Statistics
RAPIDD Postdoctoral Fellow, NIH Fogarty International Center and UC Davis
PhD in Population Biology, University of California, Davis
BA in Computational Ecology, University of Tennessee, Knoxville
curriculum vitae
Alex is interested in all aspects of research in the lab. This includes work to improve the integration of transmission dynamics into infectious disease mapping and forecasting, using models to enhance the assessment of intervention efficacy and impact, and work to improve understanding of how multiple forms of global change will affect the future distribution and burden of infectious diseases.
Associate Professor of Biological Sciences
Concurrent Associate Professor of Applied and Computational Mathematics and Statistics
RAPIDD Postdoctoral Fellow, NIH Fogarty International Center and UC Davis
PhD in Population Biology, University of California, Davis
BA in Computational Ecology, University of Tennessee, Knoxville
curriculum vitae
Alex is interested in all aspects of research in the lab. This includes work to improve the integration of transmission dynamics into infectious disease mapping and forecasting, using models to enhance the assessment of intervention efficacy and impact, and work to improve understanding of how multiple forms of global change will affect the future distribution and burden of infectious diseases.
Sean Moore
Research Assistant Professor of Biological Sciences
Postdoc, Johns Hopkins Bloomberg School of Public Health
Postdoc, National Center for Atmospheric Research
PhD in Zoology, Oregon State University
BS in Biology, Virginia Tech
BBA in Information Technology, College of William and Mary
curriculum vitae
Sean's research is focused on combining surveillance and modeling approaches to understand how socioeconomic, climatic, and ecological drivers influence the emergence and spread of water-borne and vector-borne pathogens of humans. His research specialties include integrating ecological and climatic variables into mechanistic and statistical models to explain infectious disease dynamics and predict future transmission dynamics. He is currently involved in research on the epidemiology of cholera, chikungunya, and Zika.
Research Assistant Professor of Biological Sciences
Postdoc, Johns Hopkins Bloomberg School of Public Health
Postdoc, National Center for Atmospheric Research
PhD in Zoology, Oregon State University
BS in Biology, Virginia Tech
BBA in Information Technology, College of William and Mary
curriculum vitae
Sean's research is focused on combining surveillance and modeling approaches to understand how socioeconomic, climatic, and ecological drivers influence the emergence and spread of water-borne and vector-borne pathogens of humans. His research specialties include integrating ecological and climatic variables into mechanistic and statistical models to explain infectious disease dynamics and predict future transmission dynamics. He is currently involved in research on the epidemiology of cholera, chikungunya, and Zika.
Guido España
Research Assistant Professor of Biological Sciences
Indiana CTSI Postdoctoral Fellow, University of Notre Dame
PhD in Electrical Engineering, Universidad Nacional de Colombia
BS in Electrical Engineering, Universidad Nacional de Colombia
Guido is working on detailed simulation models of dengue virus transmission and applying them in the context of dengue vaccine trials.
Research Assistant Professor of Biological Sciences
Indiana CTSI Postdoctoral Fellow, University of Notre Dame
PhD in Electrical Engineering, Universidad Nacional de Colombia
BS in Electrical Engineering, Universidad Nacional de Colombia
Guido is working on detailed simulation models of dengue virus transmission and applying them in the context of dengue vaccine trials.
Postdocs
Sean Cavany
Postdoctoral Researcher
PhD in Infectious Disease Epidemiology, London School of Hygiene & Tropical Medicine
MSci in Mathematics, Imperial College London
Sean is generally interested in creating mathematical models of infectious diseases and using them to aid understanding of the impact of interventions. His current research focuses on developing an agent based model of Zika virus with the aim of optimizing vector control in the event of an outbreak. His recently completed PhD used a range of approaches to shed light on tuberculosis contact investigations in London, and involved molecular epidemiology and cost-effectiveness analysis in addition to modeling.
Postdoctoral Researcher
PhD in Infectious Disease Epidemiology, London School of Hygiene & Tropical Medicine
MSci in Mathematics, Imperial College London
Sean is generally interested in creating mathematical models of infectious diseases and using them to aid understanding of the impact of interventions. His current research focuses on developing an agent based model of Zika virus with the aim of optimizing vector control in the event of an outbreak. His recently completed PhD used a range of approaches to shed light on tuberculosis contact investigations in London, and involved molecular epidemiology and cost-effectiveness analysis in addition to modeling.
Anita Lerch
Postdoctoral Researcher
PhD, Swiss Tropical and Public Health Institute
Anita is interested in genomic epidemiology of malaria.
Postdoctoral Researcher
PhD, Swiss Tropical and Public Health Institute
Anita is interested in genomic epidemiology of malaria.
Graduate Students
John Huber
Graduate Student
PhD Candidate in Biological Sciences
MPhil in Veterinary Science, University of Cambridge
BS in Applied and Computational Mathematics and Statistics, University of Notre Dame
After doing research in the lab as an undergraduate at Notre Dame, John went to Cambridge and completed an MPhil with support from a Gates Scholarship. He is now back at Notre Dame as a PhD student in Biological Sciences and is supported by an NSF Graduate Research Fellowship.
Graduate Student
PhD Candidate in Biological Sciences
MPhil in Veterinary Science, University of Cambridge
BS in Applied and Computational Mathematics and Statistics, University of Notre Dame
After doing research in the lab as an undergraduate at Notre Dame, John went to Cambridge and completed an MPhil with support from a Gates Scholarship. He is now back at Notre Dame as a PhD student in Biological Sciences and is supported by an NSF Graduate Research Fellowship.
Annaliese Wieler
Graduate Student
PhD Candidate in Biological Sciences
BS in Biology and Mathematics, Tabor College
website
Annaliese is a third-year PhD candidate and is also pursuing an MS in Applied and Computational Mathematics and Statistics. She is interested in modeling vector intervention trials.
Graduate Student
PhD Candidate in Biological Sciences
BS in Biology and Mathematics, Tabor College
website
Annaliese is a third-year PhD candidate and is also pursuing an MS in Applied and Computational Mathematics and Statistics. She is interested in modeling vector intervention trials.
Quan Tran Minh
Graduate Student
PhD Student in Biological Sciences
MD, Pham Ngoc Thach University of Medicine, Vietnam
After graduating as a medical doctor, Quan decided to become a full-time researcher and develop his interest in analyzing medical and biological data. He recently spent two and a half years at the Department of Mathematical Modeling in the Oxford University Clinical Research Unit investigating the transmission of chikungunya and Japanese encephalitis viruses by applying quantitative methods to serological and case notification data.
Graduate Student
PhD Student in Biological Sciences
MD, Pham Ngoc Thach University of Medicine, Vietnam
After graduating as a medical doctor, Quan decided to become a full-time researcher and develop his interest in analyzing medical and biological data. He recently spent two and a half years at the Department of Mathematical Modeling in the Oxford University Clinical Research Unit investigating the transmission of chikungunya and Japanese encephalitis viruses by applying quantitative methods to serological and case notification data.
Alan Costello
Graduate Student (advised by Sean Moore)
PhD Student in Biological Sciences
MSc in Geocomputation, National Centre for Geocomputation
BA (Hons) Geography and Music, National University of Ireland, Maynooth
Alan’s background is in spatiotemporal epidemiology with a focus on climatology and biogeography. Before coming to Notre Dame, Alan worked for eSpatial, a leading cloud mapping software company. His previous research concentrated on modeling diabetes prevalence in Ireland and dengue surveillance and control methods in Malaysia. His current project centers on the epidemiology and forecasting of cholera in Africa.
Graduate Student (advised by Sean Moore)
PhD Student in Biological Sciences
MSc in Geocomputation, National Centre for Geocomputation
BA (Hons) Geography and Music, National University of Ireland, Maynooth
Alan’s background is in spatiotemporal epidemiology with a focus on climatology and biogeography. Before coming to Notre Dame, Alan worked for eSpatial, a leading cloud mapping software company. His previous research concentrated on modeling diabetes prevalence in Ireland and dengue surveillance and control methods in Malaysia. His current project centers on the epidemiology and forecasting of cholera in Africa.
Marya Poterek
Graduate Student
PhD Student in Biological Sciences
BS in Science-Computing, University of Notre Dame
Marya is in the second year of her PhD and is interested in integrating social data approaches into infectious disease modeling. She is currently working on a project modeling Zika, dengue, and chikungunya virus co-infections.
Graduate Student
PhD Student in Biological Sciences
BS in Science-Computing, University of Notre Dame
Marya is in the second year of her PhD and is interested in integrating social data approaches into infectious disease modeling. She is currently working on a project modeling Zika, dengue, and chikungunya virus co-infections.
Carly Barbera
Graduate Student (co-advised by Jason Rohr)
PhD Student in Biological Sciences
BS in Biology, Vassar College
Carly is a second year PhD student interested in the ecological drivers of disease. She is part of a team funded by a USDA-NIFA EEID grant on bluetongue virus.
Graduate Student (co-advised by Jason Rohr)
PhD Student in Biological Sciences
BS in Biology, Vassar College
Carly is a second year PhD student interested in the ecological drivers of disease. She is part of a team funded by a USDA-NIFA EEID grant on bluetongue virus.
Undergraduates
Georgia Mudd
Undergraduate Researcher
Pursuing a BS in Applied and Computational Mathematics and Statistics
Georgia is working with John on a project to estimate the serial interval of Plasmodium vivax malaria using a combination of modeling and empirical data.
Undergraduate Researcher
Pursuing a BS in Applied and Computational Mathematics and Statistics
Georgia is working with John on a project to estimate the serial interval of Plasmodium vivax malaria using a combination of modeling and empirical data.
Maggie Elliott
Undergraduate Researcher
Pursuing a BS in Applied and Computational Mathematics and Statistics
Maggie is working with Annaliese on a project to estimate intervention efficacy for mosquito interventionos
Undergraduate Researcher
Pursuing a BS in Applied and Computational Mathematics and Statistics
Maggie is working with Annaliese on a project to estimate intervention efficacy for mosquito interventionos
Maggie O'Connor
Undergraduate Researcher
Pursuing a BS in Environmental Science
Maggie is working with Quan on a project on yellow fever.
Undergraduate Researcher
Pursuing a BS in Environmental Science
Maggie is working with Quan on a project on yellow fever.
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Brendan Schwartz
Undergraduate Researcher
Pursuing a BS in Applied and Computational Mathematics and Statistics and Science-Preprofessional Studies
Brendan is interested in modeling COVID-19.
Undergraduate Researcher
Pursuing a BS in Applied and Computational Mathematics and Statistics and Science-Preprofessional Studies
Brendan is interested in modeling COVID-19.
Alumni
Postdoctoral Researchers
Guido España, Postdoctoral Researcher, 2016-2020, Research Assistant Professor, University of Notre Dame
Morgan Smith, Postdoctoral Researcher, 2020, Epidemiological Analyst for the CDC Foundation and State of Pennsylvania
Amir Siraj, Postdoctoral Researcher, 2015-2020, Research and Data Analyst on Malaria and Neglected Tropical Diseases at PATH
James Soda, Postdoctoral Researcher, 2017-2019, Assistant Professor at Quinnipiac University
PhD Students
Rachel Oidtman, PhD in Biological Sciences, 2020, Postdoctoral Researcher at University of Chicago with Sarah Cobey
Quirine ten Bosch, PhD in Biological Sciences, 2017, Assistant Professor at Wageningen University, The Netherlands
Masters Students
Jonah Barreto, MS in Global Health, 2017, employed at Epic Systems Corporation in Madison, WI
Michael Prough, MS in Global Health, 2016, Clinical Research Coordinator at University of Miami
Karly Harrod, MS in Applied and Computational Mathematics and Statistics, 2016
Undergraduates
Kathryn Strimbu, BS in Biological Sciences, 2022
Molly Hartlage, BS in Biological Sciences, 2020, lab technician at University of Michigan
Cassie Miller, BS in Applied and Computational Mathematics Statistics, 2019, MS Student in ACMS at University of Notre Dame
Yutong Yao, BS in Pre-Health and Economics, 2019, MPH Student at Emory University
Maggie Walters, BS in Biological Sciences, 2019, Post-Bachelor Fellow at Institute for Health Metrics and Evaluation
Marya Poterek, BS in Science-Computing, 2019, PhD Student in Biological Sciences at University of Notre Dame
Katherine Koh, BS in Applied and Computational Mathematics and Statistics, 2019, gap year before medical school
Henri Chung, BS in Biological Sciences, 2019, PhD Student in Computational Biology at Iowa State University
Caleb Johnson, BS in Applied and Computational Mathematics and Statistics, 2017, Data Scientist at BoozAllenHamilton
John Huber, BS in Applied and Computational Mathematics and Statistics, 2017, MPhil student and Gates Scholar at Cambridge
Ethan Holland, BS in Biological Sciences, 2017, MD Student at University of Florida
Adam Haydel, BS in Science-Business, 2016, MD Student at Louisiana State University
Guido España, Postdoctoral Researcher, 2016-2020, Research Assistant Professor, University of Notre Dame
Morgan Smith, Postdoctoral Researcher, 2020, Epidemiological Analyst for the CDC Foundation and State of Pennsylvania
Amir Siraj, Postdoctoral Researcher, 2015-2020, Research and Data Analyst on Malaria and Neglected Tropical Diseases at PATH
James Soda, Postdoctoral Researcher, 2017-2019, Assistant Professor at Quinnipiac University
PhD Students
Rachel Oidtman, PhD in Biological Sciences, 2020, Postdoctoral Researcher at University of Chicago with Sarah Cobey
Quirine ten Bosch, PhD in Biological Sciences, 2017, Assistant Professor at Wageningen University, The Netherlands
Masters Students
Jonah Barreto, MS in Global Health, 2017, employed at Epic Systems Corporation in Madison, WI
Michael Prough, MS in Global Health, 2016, Clinical Research Coordinator at University of Miami
Karly Harrod, MS in Applied and Computational Mathematics and Statistics, 2016
Undergraduates
Kathryn Strimbu, BS in Biological Sciences, 2022
Molly Hartlage, BS in Biological Sciences, 2020, lab technician at University of Michigan
Cassie Miller, BS in Applied and Computational Mathematics Statistics, 2019, MS Student in ACMS at University of Notre Dame
Yutong Yao, BS in Pre-Health and Economics, 2019, MPH Student at Emory University
Maggie Walters, BS in Biological Sciences, 2019, Post-Bachelor Fellow at Institute for Health Metrics and Evaluation
Marya Poterek, BS in Science-Computing, 2019, PhD Student in Biological Sciences at University of Notre Dame
Katherine Koh, BS in Applied and Computational Mathematics and Statistics, 2019, gap year before medical school
Henri Chung, BS in Biological Sciences, 2019, PhD Student in Computational Biology at Iowa State University
Caleb Johnson, BS in Applied and Computational Mathematics and Statistics, 2017, Data Scientist at BoozAllenHamilton
John Huber, BS in Applied and Computational Mathematics and Statistics, 2017, MPhil student and Gates Scholar at Cambridge
Ethan Holland, BS in Biological Sciences, 2017, MD Student at University of Florida
Adam Haydel, BS in Science-Business, 2016, MD Student at Louisiana State University
